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What is pI formula?

Published in Biochemistry Formulas 2 mins read

The provided reference contains information about calculating the value of Pi (π), not pI (isoelectric point). Therefore, I will provide the formula for calculating Pi based on common knowledge and then discuss the formula from the reference.

The question is ambiguous. pI can refer to two different things, the question doesn't specify which one, therefore I will answer about the isoelectric point first, then about Pi.

Isoelectric Point (pI)

The isoelectric point (pI) is the pH at which a molecule carries no net electrical charge. This is particularly important for amino acids and proteins. The formula for calculating the pI depends on the molecule in question and its ionizable groups.

For Amino Acids with Non-Ionizable Side Chains:

The pI is simply the average of the pKa values of the carboxyl and amino groups:

pI = (pKa1 + pKa2) / 2

Where:

  • pKa1 is the pKa of the carboxyl group (-COOH).
  • pKa2 is the pKa of the amino group (-NH3+).

For Amino Acids with Ionizable Side Chains:

The calculation is more complex and depends on whether the side chain is acidic or basic.

  • Acidic Side Chain (e.g., Aspartic Acid, Glutamic Acid): Average the two lowest pKa values.
    pI = (pKa1 + pKaR) / 2 (where pKaR is the pKa of the side chain)

  • Basic Side Chain (e.g., Lysine, Arginine, Histidine): Average the two highest pKa values.
    pI = (pKaR + pKa2) / 2 (where pKaR is the pKa of the side chain)

For Proteins:

Calculating the pI of a protein is complex and often requires computational methods. It involves considering all the ionizable amino acid residues within the protein sequence. Many online tools and software programs are available to estimate protein pI values.

Pi (π)

According to the reference: To calculate the value of π, the pi formula is used, which is:

π = (Circumference / Diameter)

Or,

π = 3.14159 = 22/7.

This demonstrates a fundamental relationship between a circle's circumference and its diameter, which defines the value of Pi.