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How to Calculate Specificity from Confusion Matrix?

Published in Machine Learning Metrics 3 mins read

Specificity, also known as the True Negative Rate, is calculated from a confusion matrix using the formula: True Negatives (TN) divided by the sum of True Negatives (TN) and False Positives (FP).

Understanding the Confusion Matrix

A confusion matrix is a table that is often used to describe the performance of a classification model (or "classifier") on a set of test data for which the true values are known. It allows for the visualization of the performance of an algorithm. Each row of the matrix represents the instances in a predicted class, while each column represents the instances in an actual class (or vice versa).

Here's how the components are typically laid out:

Predicted Negative Predicted Positive
Actual Negative True Negatives (TN) False Positives (FP)
Actual Positive False Negatives (FN) True Positives (TP)

Let's break down each term:

  • True Positives (TP): Cases where the model correctly predicted the positive class.
  • True Negatives (TN): Cases where the model correctly predicted the negative class.
  • False Positives (FP): Cases where the model incorrectly predicted the positive class (it predicted positive, but the actual was negative). This is also known as a Type I error.
  • False Negatives (FN): Cases where the model incorrectly predicted the negative class (it predicted negative, but the actual was positive). This is also known as a Type II error.

Calculating Specificity

Specificity measures the proportion of actual negative cases that were correctly identified as negative by the model. It is particularly important when the cost of false positives is high.

The formula for specificity is:

$$ \text{Specificity} = \frac{\text{True Negatives (TN)}}{\text{True Negatives (TN)} + \text{False Positives (FP)}} $$

In simpler terms: Specificity tells you how good your model is at identifying negative cases when they are actually negative. It focuses on the model's ability to avoid incorrectly classifying negative instances as positive.

Practical Example

Let's say we have a model designed to detect a rare disease. We test it on 100 people and get the following confusion matrix:

Predicted No Disease Predicted Disease
Actual No Disease TN = 70 FP = 5
Actual Disease FN = 10 TP = 15

From this matrix:

  • True Negatives (TN) = 70 (The model correctly identified 70 healthy people as healthy)
  • False Positives (FP) = 5 (The model incorrectly identified 5 healthy people as having the disease)

Now, we can calculate the specificity:

$$ \text{Specificity} = \frac{\text{TN}}{\text{TN} + \text{FP}} = \frac{70}{70 + 5} = \frac{70}{75} \approx 0.9333 $$

So, the specificity of this model is approximately 0.9333 or 93.33%. This means that out of all the people who actually did not have the disease, the model correctly identified 93.33% of them as not having the disease.

Importance of Specificity

  • Medical Diagnostics: In medical testing, high specificity is crucial when a false positive diagnosis could lead to unnecessary and potentially harmful treatments, anxiety, or further expensive diagnostic procedures.
  • Spam Detection: A high specificity in a spam filter means very few legitimate emails are incorrectly flagged as spam (avoiding false positives).
  • Quality Control: In manufacturing, high specificity ensures that good products are not mistakenly rejected as defective.

Understanding and calculating specificity is vital for evaluating a classification model's performance, especially in scenarios where correctly identifying true negative instances is paramount.